Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 · Genome biology · 23K citations
https://doi.org/10.1186/gb-2009-10-3-r25
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Cole Trapnell
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Cole Trapnell is an academic researcher from University of Washington. The author has contributed to research in topics: Single-cell and spatial transcriptomics & RNA Research and Splicing & Zebrafish Biomedical Research Applications. The author has an h-index of 76, co-authored 220 publications.
ORCID: 0000-0002-8105-4347Papers by this author
worksTranscript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
2010 · Nature Biotechnology · 16K citations
https://doi.org/10.1038/nbt.1621
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
2013 · Genome biology · 14K citations
https://doi.org/10.1186/gb-2013-14-4-r36
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
2014 · Nature Biotechnology · 7,402 citations
https://doi.org/10.1038/nbt.2859
Reversed graph embedding resolves complex single-cell trajectories
2017 · Nature Methods · 5,149 citations
https://doi.org/10.1038/nmeth.4402
The single-cell transcriptional landscape of mammalian organogenesis
2019 · Nature · 4,546 citations
https://doi.org/10.1038/s41586-019-0969-x
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