Fast gapped-read alignment with Bowtie 2
2012 · Nature Methods · 60K citations
https://doi.org/10.1038/nmeth.1923
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Steven L. Salzberg
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Steven L. Salzberg is an academic researcher from Johns Hopkins University. The author has contributed to research in topics: Genomics and Phylogenetic Studies & RNA and protein synthesis mechanisms & Chromosomal and Genetic Variations. The author has an h-index of 160, co-authored 507 publications.
ORCID: 0000-0002-8859-7432Papers by this author
worksHISAT: a fast spliced aligner with low memory requirements
2015 · Nature Methods · 25K citations
https://doi.org/10.1038/nmeth.3317
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 · Genome biology · 23K citations
https://doi.org/10.1186/gb-2009-10-3-r25
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
2010 · Nature Biotechnology · 16K citations
https://doi.org/10.1038/nbt.1621
FLASH: fast length adjustment of short reads to improve genome assemblies
2011 · Bioinformatics · 15K citations
https://doi.org/10.1093/bioinformatics/btr507
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 · Nature Biotechnology · 15K citations
https://doi.org/10.1038/nbt.3122
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