Nucleotide Transformer: building and evaluating robust foundation models for human genomics
2024 · Nature Methods · 297 citations
https://doi.org/10.1038/s41592-024-02523-z
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Bernardo P. de Almeida
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Bernardo P. de Almeida is an academic researcher from Institute on Taxation and Economic Policy. The author has contributed to research in topics: Genomics and Chromatin Dynamics & RNA and protein synthesis mechanisms & Genomics and Phylogenetic Studies. The author has an h-index of 15, co-authored 41 publications.
ORCID: 0000-0002-6084-6775Papers by this author
worksDeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers
2022 · Nature Genetics · 274 citations
https://doi.org/10.1038/s41588-022-01048-5
Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers
2019 · BMC Cancer · 146 citations
https://doi.org/10.1186/s12885-019-5403-0
Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesis
2018 · Nature Communications · 93 citations
https://doi.org/10.1038/s41467-018-05748-7
Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo
2023 · Nature · 84 citations
https://doi.org/10.1038/s41586-023-06905-9
A foundational large language model for edible plant genomes
2024 · Communications Biology · 55 citations
https://doi.org/10.1038/s42003-024-06465-2
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