decoupleR: ensemble of computational methods to infer biological activities from omics data
2022 · Bioinformatics Advances · 905 citations
https://doi.org/10.1093/bioadv/vbac016
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Ricardo O. Ramirez Flores
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Ricardo O. Ramirez Flores is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Single-cell and spatial transcriptomics & Bioinformatics and Genomic Networks & Gene Regulatory Network Analysis. The author has an h-index of 20, co-authored 50 publications.
ORCID: 0000-0003-0087-371XPapers by this author
worksSpatial multi-omic map of human myocardial infarction
2022 · Nature · 620 citations
https://doi.org/10.1038/s41586-022-05060-x
Gene regulatory network inference in the era of single-cell multi-omics
2023 · Nature Reviews Genetics · 401 citations
https://doi.org/10.1038/s41576-023-00618-5
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data
2022 · Genome biology · 236 citations
https://doi.org/10.1186/s13059-022-02663-5
LIANA+ provides an all-in-one framework for cell–cell communication inference
2024 · Nature Cell Biology · 167 citations
https://doi.org/10.1038/s41556-024-01469-w
LIANA+: an all-in-one cell-cell communication framework
2023 · bioRxiv (Cold Spring Harbor Laboratory) · 34 citations
https://doi.org/10.1101/2023.08.19.553863
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