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Open AccessDataset10.5281/zenodo.11455

Vcf File Of Variants In A Wide Onion Cross Segregating For Bolting

Samantha Baldwin,John McCallum,Susan Thomson,Meeghan Pither-Joyce,Kathryn M. Wright,Ben Warren+3 more-2014-08-25-Zenodo (CERN European Organization for Nuclear Research)
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TL;DRAbstract

VCF (variant call format) file of variants from bulked segregant RNA PoolSeq (BSR-seq) of F2 progeny pools of a wide onion cross segregating for bolting (precocious flowering). The reference assembly is GBGJ00000000.1 http://www.ncbi.nlm.nih.gov/nuccore/656904698 The pools were taken from materials sampled for validation of the <em>AcBlt1</em> locus as described in http://www.ncbi.nlm.nih.gov/pubmed/24247236 Pools were from bolting or non-bolting plants homozygous at the most closely linked marker to <em>AcBlt1 </em>either for the bolt-associated genotype (AA) or the non-bolt genotype (BB).

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VCF (variant call format) file of variants from bulked segregant RNA PoolSeq (BSR-seq) of F2 progeny pools of a wide onion cross segregating for bolting (precocious flowering). The reference assembly is GBGJ00000000.1 http://www.ncbi.nlm.nih.gov/nuccore/656904698 The pools were taken from materials sampled for validation of the <em>AcBlt1</em> locus as described in http://www.ncbi.nlm.nih.gov/pubmed/24247236 Pools were from bolting or non-bolting plants homozygous at the most closely linked marker to <em>AcBlt1 </em>either for the bolt-associated genotype (AA) or the non-bolt genotype (BB).

Keywords

BoltingBiologyGeneticsHorticultureComputer science

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